Publications

2024

  1. Artificial Intelligence-Enhanced Breast MRI
    Investigative Radiology
    R. Lo Gullo, E. Marcus, J. Huayanay, S. Eskreis-Winkler, S. Thakur, J. Teuwen, K. Pinker, 2024
    Abstract
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  2. On retrospective k-space subsampling schemes for deep MRI reconstruction
    Magnetic Resonance Imaging
    G. Yiasemis, C. I. Sánchez, J. Sonke, J. Teuwen, 2024
    Abstract
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  3. Nodule detection and generation on chest X-rays: NODE21 Challenge
    E. Sogancioglu, B. V. Ginneken, F. Behrendt, M. Bengs, A. Schlaefer, M. Radu, D. Xu, K. Sheng, F. Scalzo, E. Marcus, S. Papa, J. Teuwen, E. T. Scholten, S. Schalekamp, N. Hendrix, C. Jacobs, W. Hendrix, C. I. Sánchez, K. Murphy, 2024
    Abstract
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  4. Image‐based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno‐oncology Biomarker Working Group on Breast Cancer
    The Journal of Pathology
    C. A. Jahangir, D. B. Page, G. Broeckx, C. A. Gonzalez, C. Burke, C. Murphy, J. S. Reis‐Filho, A. Ly, P. W. Harms, R. R. Gupta, M. Vieth, A. I. Hida, M. Kahila, Z. Kos, P. J. Van Diest, S. Verbandt, J. Thagaard, R. Khiroya, K. Abduljabbar, G. Acosta Haab, B. Acs, S. Adams, J. S. Almeida, I. Alvarado‐Cabrero, F. Azmoudeh‐Ardalan, S. Badve, N. B. Baharun, E. R. Bellolio, V. Bheemaraju, K. R. Blenman, L. Botinelly Mendonça Fujimoto, O. Burgues, A. Chardas, M. C. U. Cheang, F. Ciompi, L. A. Cooper, A. Coosemans, G. Corredor, F. L. Dantas Portela, F. Deman, S. Demaria, S. N. Dudgeon, M. Elghazawy, C. Fernandez‐Martín, S. Fineberg, S. B. Fox, J. M. Giltnane, S. Gnjatic, P. I. Gonzalez‐Ericsson, A. Grigoriadis, N. Halama, M. G. Hanna, A. Harbhajanka, S. N. Hart, J. Hartman, S. Hewitt, H. M. Horlings, Z. Husain, S. Irshad, E. A. Janssen, T. R. Kataoka, K. Kawaguchi, A. I. Khramtsov, U. Kiraz, P. Kirtani, L. L. Kodach, K. Korski, G. Akturk, E. Scott, A. Kovács, A. Lænkholm, C. Lang‐Schwarz, D. Larsimont, J. K. Lennerz, M. Lerousseau, X. Li, A. Madabhushi, S. K. Maley, V. Manur Narasimhamurthy, D. K. Marks, E. S. Mcdonald, R. Mehrotra, S. Michiels, D. Kharidehal, F. U. A. A. Minhas, S. Mittal, D. A. Moore, S. Mushtaq, H. Nighat, T. Papathomas, F. Penault‐Llorca, R. D. Perera, C. J. Pinard, J. C. Pinto‐Cardenas, G. Pruneri, L. Pusztai, N. M. Rajpoot, B. L. Rapoport, T. T. Rau, J. M. Ribeiro, D. Rimm, A. Vincent‐Salomon, J. Saltz, S. Sayed, E. Hytopoulos, S. Mahon, K. P. Siziopikou, C. Sotiriou, A. Stenzinger, M. A. Sughayer, D. Sur, F. Symmans, S. Tanaka, T. Taxter, S. Tejpar, J. Teuwen, E. A. Thompson, T. Tramm, W. T. Tran, J. Van Der Laak, G. E. Verghese, G. Viale, N. Wahab, T. Walter, Y. Waumans, H. Y. Wen, W. Yang, Y. Yuan, J. Bartlett, S. Loibl, C. Denkert, P. Savas, S. Loi, E. Specht Stovgaard, R. Salgado, W. M. Gallagher, A. Rahman, 2024
    Abstract
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  5. To deform or not: treatment-aware longitudinal registration for breast DCE-MRI during neoadjuvant chemotherapy via unsupervised keypoints detection
    L. Han, T. Tan, T. Zhang, Y. Gao, X. Wang, V. Longo, S. Ventura-Díaz, A. D'Angelo, J. Teuwen, R. Mann, 2024
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  6. Equivariant Multiscale Learned Invertible Reconstruction for Cone Beam CT
    N. Moriakov, J. Sonke, J. Teuwen, 2024
    Abstract
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  7. Deep Cardiac MRI Reconstruction with ADMM
    Statistical Atlases and Computational Models of the Heart. Regular and CMRxRecon Challenge Papers
    G. Yiasemis, N. Moriakov, J. Sonke, J. Teuwen, 2024
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2023

  1. Constrained Empirical Risk Minimization: Theory and Practice
    E. Marcus, R. Sheombarsing, J. Sonke, J. Teuwen, 2023
    Abstract
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  2. IMPORTANT-Net: Integrated MRI Multi-Parameter Reinforcement Fusion Generator with Attention Network for Synthesizing Absent Data
    T. Zhang, T. Tan, L. Han, X. Wang, Y. Gao, J. Teuwen, R. Beets-Tan, R. Mann, 2023
    Abstract
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  3. STAPLER: Efficient learning of TCR-peptide specificity prediction from full-length TCR-peptide data
    B. P. Y. Kwee, M. Messemaker, E. Marcus, G. Oliveira, W. Scheper, C. J. Wu, J. Teuwen, T. N. Schumacher, 2023
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  4. Nature of spatial universes in 3D Lorentzian quantum gravity
    Physical Review D
    J. Brunekreef, R. Loll, 2023, 107;(2)
    Abstract
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  5. Predicting up to 10 year breast cancer risk using longitudinal mammographic screening history
    X. Wang, T. Tan, Y. Gao, R. Su, T. Zhang, L. Han, J. Teuwen, A. D’Angelo, C. A. Drukker, M. K. Schmidt, R. Beets-Tan, N. Karssemeijer, R. Mann, 2023
    Abstract
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  6. Visualize what you learn: a well-explainable joint-learning framework based on multi-view mammograms and associated reports
    Y. Gao, H. Zhou, X. Wang, T. Zhang, R. Tan, L. Han, L. Estacio, A. D’Angelo, J. Teuwen, R. Mann, T. Tan, 2023
    Abstract
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  7. RadioLOGIC, a healthcare model for processing electronic health records and decision-making in breast disease
    Cell Reports Medicine
    T. Zhang, T. Tan, X. Wang, Y. Gao, L. Han, L. Balkenende, A. D’Angelo, L. Bao, H. M. Horlings, J. Teuwen, R. G. Beets-Tan, R. M. Mann, 2023
    Abstract
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  8. Spatial analyses of immune cell infiltration in cancer: current methods and future directions. A report of the International Immuno‐Oncology Biomarker Working Group on Breast Cancer
    The Journal of Pathology
    D. B. Page, G. Broeckx, C. A. Jahangir, S. Verbandt, R. R. Gupta, J. Thagaard, R. Khiroya, Z. Kos, K. Abduljabbar, G. Acosta Haab, B. Acs, J. S. Almeida, I. Alvarado‐Cabrero, F. Azmoudeh‐Ardalan, S. Badve, N. B. Baharun, E. R. Bellolio, V. Bheemaraju, K. R. Blenman, L. Botinelly Mendonça Fujimoto, O. Burgues, M. C. U. Cheang, F. Ciompi, L. A. Cooper, A. Coosemans, G. Corredor, F. L. Dantas Portela, F. Deman, S. Demaria, S. N. Dudgeon, M. Elghazawy, S. Ely, C. Fernandez‐Martín, S. Fineberg, S. B. Fox, W. M. Gallagher, J. M. Giltnane, S. Gnjatic, P. I. Gonzalez‐Ericsson, A. Grigoriadis, N. Halama, M. G. Hanna, A. Harbhajanka, A. Hardas, S. N. Hart, J. Hartman, S. Hewitt, A. I. Hida, H. M. Horlings, Z. Husain, E. Hytopoulos, S. Irshad, E. A. Janssen, M. Kahila, T. R. Kataoka, K. Kawaguchi, D. Kharidehal, A. I. Khramtsov, U. Kiraz, P. Kirtani, L. L. Kodach, K. Korski, A. Kovács, A. Laenkholm, C. Lang‐Schwarz, D. Larsimont, J. K. Lennerz, M. Lerousseau, X. Li, A. Ly, A. Madabhushi, S. K. Maley, V. Manur Narasimhamurthy, D. K. Marks, E. S. Mcdonald, R. Mehrotra, S. Michiels, F. U. A. A. Minhas, S. Mittal, D. A. Moore, S. Mushtaq, H. Nighat, T. Papathomas, F. Penault‐Llorca, R. D. Perera, C. J. Pinard, J. C. Pinto‐Cardenas, G. Pruneri, L. Pusztai, A. Rahman, N. M. Rajpoot, B. L. Rapoport, T. T. Rau, J. S. Reis‐Filho, J. M. Ribeiro, D. Rimm, A. Salomon, M. Salto‐Tellez, J. Saltz, S. Sayed, K. P. Siziopikou, C. Sotiriou, A. Stenzinger, M. A. Sughayer, D. Sur, F. Symmans, S. Tanaka, T. Taxter, S. Tejpar, J. Teuwen, E. A. Thompson, T. Tramm, W. T. Tran, J. Van Der Laak, P. J. Van Diest, G. E. Verghese, G. Viale, M. Vieth, N. Wahab, T. Walter, Y. Waumans, H. Y. Wen, W. Yang, Y. Yuan, S. Adams, J. M. S. Bartlett, S. Loibl, C. Denkert, P. Savas, S. Loi, R. Salgado, E. Specht Stovgaard, G. Akturk, N. Bouchmaa, 2023
    Abstract
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  9. Improving Lesion Volume Measurements on Digital Mammograms
    N. Moriakov, J. Peters, R. Mann, N. Karssemeijer, J. V. Dijck, M. Broeders, J. Teuwen, 2023
    Abstract
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  10. Pitfalls in machine learning‐based assessment of tumor‐infiltrating lymphocytes in breast cancer: A report of the International Immuno‐Oncology Biomarker Working Group on Breast Cancer
    The Journal of Pathology
    J. Thagaard, G. Broeckx, D. B. Page, C. A. Jahangir, S. Verbandt, Z. Kos, R. Gupta, R. Khiroya, K. Abduljabbar, G. Acosta Haab, B. Acs, G. Akturk, J. S. Almeida, I. Alvarado‐Cabrero, M. Amgad, F. Azmoudeh‐Ardalan, S. Badve, N. B. Baharun, E. Balslev, E. R. Bellolio, V. Bheemaraju, K. R. Blenman, L. Botinelly Mendonça Fujimoto, N. Bouchmaa, O. Burgues, A. Chardas, M. Chon U Cheang, F. Ciompi, L. A. Cooper, A. Coosemans, G. Corredor, A. B. Dahl, F. L. Dantas Portela, F. Deman, S. Demaria, J. Doré Hansen, S. N. Dudgeon, T. Ebstrup, M. Elghazawy, C. Fernandez‐Martín, S. B. Fox, W. M. Gallagher, J. M. Giltnane, S. Gnjatic, P. I. Gonzalez‐Ericsson, A. Grigoriadis, N. Halama, M. G. Hanna, A. Harbhajanka, S. N. Hart, J. Hartman, S. Hauberg, S. Hewitt, A. I. Hida, H. M. Horlings, Z. Husain, E. Hytopoulos, S. Irshad, E. A. Janssen, M. Kahila, T. R. Kataoka, K. Kawaguchi, D. Kharidehal, A. I. Khramtsov, U. Kiraz, P. Kirtani, L. L. Kodach, K. Korski, A. Kovács, A. Laenkholm, C. Lang‐Schwarz, D. Larsimont, J. K. Lennerz, M. Lerousseau, X. Li, A. Ly, A. Madabhushi, S. K. Maley, V. Manur Narasimhamurthy, D. K. Marks, E. S. Mcdonald, R. Mehrotra, S. Michiels, F. U. A. A. Minhas, S. Mittal, D. A. Moore, S. Mushtaq, H. Nighat, T. Papathomas, F. Penault‐Llorca, R. D. Perera, C. J. Pinard, J. C. Pinto‐Cardenas, G. Pruneri, L. Pusztai, A. Rahman, N. M. Rajpoot, B. L. Rapoport, T. T. Rau, J. S. Reis‐Filho, J. M. Ribeiro, D. Rimm, A. Roslind, A. Vincent‐Salomon, M. Salto‐Tellez, J. Saltz, S. Sayed, E. Scott, K. P. Siziopikou, C. Sotiriou, A. Stenzinger, M. A. Sughayer, D. Sur, S. Fineberg, F. Symmans, S. Tanaka, T. Taxter, S. Tejpar, J. Teuwen, E. A. Thompson, T. Tramm, W. T. Tran, J. Van Der Laak, P. J. Van Diest, G. E. Verghese, G. Viale, M. Vieth, N. Wahab, T. Walter, Y. Waumans, H. Y. Wen, W. Yang, Y. Yuan, R. M. Zin, S. Adams, J. Bartlett, S. Loibl, C. Denkert, P. Savas, S. Loi, R. Salgado, E. Specht Stovgaard, 2023, 260;(5):498-513
    Abstract
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  11. Development, validation, and simplification of a scanner‐specific CT simulator
    Medical Physics
    S. A. M. Tunissen, L. J. Oostveen, N. Moriakov, J. Teuwen, K. Michielsen, E. J. Smit, I. Sechopoulos, 2023
    Abstract
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  12. Joint machine learning and analytic track reconstruction for X-ray polarimetry with gas pixel detectors
    Astronomy & Astrophysics
    N. Cibrario, M. Negro, N. Moriakov, R. Bonino, L. Baldini, N. Di Lalla, L. Latronico, S. Maldera, A. Manfreda, N. Omodei, C. Sgró, S. Tugliani, 2023, 674
    Abstract
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  13. Reconstruction of the Corticospinal Tract in Patients with Motor-Eloquent High-Grade Gliomas Using Multilevel Fiber Tractography Combined with Functional Motor Cortex Mapping
    American Journal of Neuroradiology
    A. Zhylka, N. Sollmann, F. Kofler, A. Radwan, A. De Luca, J. Gempt, B. Wiestler, B. Menze, A. Schroeder, C. Zimmer, J. Kirschke, S. Sunaert, A. Leemans, S. Krieg, J. Pluim, 2023, 44;(3):283-290
    Abstract
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  14. vSHARP: variable Splitting Half-quadratic ADMM algorithm for Reconstruction of inverse-Problems
    G. Yiasemis, N. Moriakov, J. Sonke, J. Teuwen, 2023
    Abstract
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  15. IL-5-producing CD4+ T cells and eosinophils cooperate to enhance response to immune checkpoint blockade in breast cancer
    Cancer Cell
    O. S. Blomberg, L. Spagnuolo, H. Garner, L. Voorwerk, O. I. Isaeva, E. Van Dyk, N. Bakker, M. Chalabi, C. Klaver, M. Duijst, K. Kersten, M. Brüggemann, D. Pastoors, C. Hau, K. Vrijland, E. A. Raeven, D. Kaldenbach, K. Kos, I. S. Afonina, P. Kaptein, L. Hoes, W. S. Theelen, P. Baas, E. E. Voest, R. Beyaert, D. S. Thommen, L. F. Wessels, K. E. De Visser, M. Kok, 2023, 41;(1):106-123.e10
    Abstract
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  16. Synthesis of Contrast-Enhanced Breast MRI Using T1- and Multi-b-Value DWI-Based Hierarchical Fusion Network with Attention Mechanism
    Lecture Notes in Computer Science
    T. Zhang, L. Han, A. D’Angelo, X. Wang, Y. Gao, C. Lu, J. Teuwen, R. Beets-Tan, T. Tan, R. Mann, 2023
    Abstract
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  17. Beyond the AJR: A Breakthrough in the Use of Artificial Intelligence for Mammography in Screening for Breast Cancer
    American Journal of Roentgenology
    R. M. Mann, J. Teuwen, 2023
    Abstract
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  18. End‐to‐end memory‐efficient reconstruction for cone beam CT
    Medical Physics
    N. Moriakov, J. Sonke, J. Teuwen, 2023, 12;(50):7579-7593
    Abstract
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  19. Kandinsky Conformal Prediction: Efficient Calibration of Image Segmentation Algorithms
    J. Brunekreef, E. Marcus, R. Sheombarsing, J. Sonke, J. Teuwen, 2023
    Abstract
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  20. JSSL: Joint Supervised and Self-supervised Learning for MRI Reconstruction
    G. Yiasemis, N. Moriakov, C. I. Sánchez, J. Sonke, J. Teuwen, 2023
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  21. Synthesis-based imaging-differentiation representation learning for multi-sequence 3D/4D MRI
    Medical Image Analysis
    L. Han, T. Tan, T. Zhang, Y. Huang, X. Wang, Y. Gao, J. Teuwen, R. Mann, 2023
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  22. Clinicopathological and prognostic value of calcification morphology descriptors in ductal carcinoma in situ of the breast: a systematic review and meta-analysis
    Insights into Imaging
    M. M. Van Leeuwen, S. Doyle, A. W. Van Den Belt–Dusebout, S. Van Der Mierden, C. E. Loo, R. M. Mann, J. Teuwen, J. Wesseling, 2023, 14;(1)
    Abstract
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  23. Modeling Barrett’s Esophagus Progression Using Geometric Variational Autoencoders
    Cancer Prevention Through Early Detection
    V. Van Veldhuizen, S. Vadgama, O. De Boer, S. Meijer, E. J. Bekkers, 2023
    Abstract
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  24. Deep learning-based breast region segmentation in raw and processed digital mammograms: generalization across views and vendors
    Journal of Medical Imaging
    S. D. Verboom, M. Caballo, J. Peters, J. Gommers, D. Van Den Oever, M. J. M. Broeders, J. Teuwen, I. Sechopoulos, 2023, 11;(01)
    Abstract
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  25. 1240P Multi-centric validation of an AI-based sTIL% scoring model for breast cancer H&E whole-slide images
    Annals of Oncology
    Y. Schirris, R. Voorthuis, M. Opdam, E. Gavves, R. De Menezes, S. Linn, H. Horlings, 2023, 34
    Abstract
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  26. Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study
    Cell Reports Medicine
    J. M. Niehues, P. Quirke, N. P. West, H. I. Grabsch, M. Van Treeck, Y. Schirris, G. P. Veldhuizen, G. G. Hutchins, S. D. Richman, S. Foersch, T. J. Brinker, J. Fukuoka, A. Bychkov, W. Uegami, D. Truhn, H. Brenner, A. Brobeil, M. Hoffmeister, J. N. Kather, 2023, 4;(4):100980
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2022

  1. FlowNet-PET: Unsupervised Learning to Perform Respiratory Motion Correction in PET Imaging
    T. O'Briain, C. Uribe, K. M. Yi, J. Teuwen, I. Sechopoulos, M. Bazalova-Carter, 2022
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  2. Evaluation of deep learning-based multiparametric MRI oropharyngeal primary tumor auto-segmentation and investigation of input channel effects: Results from a prospective imaging registry
    Clinical and Translational Radiation Oncology
    K. A. Wahid, S. Ahmed, R. He, L. V. Van Dijk, J. Teuwen, B. A. Mcdonald, V. Salama, A. S. Mohamed, T. Salzillo, C. Dede, N. Taku, S. Y. Lai, C. D. Fuller, M. A. Naser, 2022, 32
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  3. DeepSMILE: Contrastive self-supervised pre-training benefits MSI and HRD classification directly from H&E whole-slide images in colorectal and breast cancer
    Medical Image Analysis
    Y. Schirris, E. Gavves, I. Nederlof, H. M. Horlings, J. Teuwen, 2022, 79
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  4. Application of Deep Learning in Breast Cancer Imaging
    Seminars in Nuclear Medicine
    L. Balkenende, J. Teuwen, R. M. Mann, 2022, 52;(5):584-596
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  5. Multi-Coil MRI Reconstruction Challenge—Assessing Brain MRI Reconstruction Models and Their Generalizability to Varying Coil Configurations
    Frontiers in Neuroscience
    Y. Beauferris, J. Teuwen, D. Karkalousos, N. Moriakov, M. Caan, G. Yiasemis, L. Rodrigues, A. Lopes, H. Pedrini, L. Rittner, M. Dannecker, V. Studenyak, F. Gröger, D. Vyas, S. Faghih-Roohi, A. Kumar Jethi, J. Chandra Raju, M. Sivaprakasam, M. Lasby, N. Nogovitsyn, W. Loos, R. Frayne, R. Souza, 2022, 16
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  6. DIRECT: Deep Image REConstruction Toolkit
    Journal of Open Source Software
    G. Yiasemis, N. Moriakov, D. Karkalousos, M. Caan, J. Teuwen, 2022, 7;(73):4278
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  7. Deep MRI reconstruction with radial subsampling
    Medical Imaging 2022: Physics of Medical Imaging
    G. Yiasemis, C. Zhang, C. I. Sánchez, J. Sonke, J. Teuwen, 2022
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