Publications
Jonas Teuwen
2024
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Image‐based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno‐oncology Biomarker Working Group on Breast CancerThe Journal of PathologyC. A. Jahangir, D. B. Page, G. Broeckx, C. A. Gonzalez, C. Burke, C. Murphy, J. S. Reis‐Filho, A. Ly, P. W. Harms, R. R. Gupta, M. Vieth, A. I. Hida, M. Kahila, Z. Kos, P. J. Van Diest, S. Verbandt, J. Thagaard, R. Khiroya, K. Abduljabbar, G. Acosta Haab, B. Acs, S. Adams, J. S. Almeida, I. Alvarado‐Cabrero, F. Azmoudeh‐Ardalan, S. Badve, N. B. Baharun, E. R. Bellolio, V. Bheemaraju, K. R. Blenman, L. Botinelly Mendonça Fujimoto, O. Burgues, A. Chardas, M. C. U. Cheang, F. Ciompi, L. A. Cooper, A. Coosemans, G. Corredor, F. L. Dantas Portela, F. Deman, S. Demaria, S. N. Dudgeon, M. Elghazawy, C. Fernandez‐Martín, S. Fineberg, S. B. Fox, J. M. Giltnane, S. Gnjatic, P. I. Gonzalez‐Ericsson, A. Grigoriadis, N. Halama, M. G. Hanna, A. Harbhajanka, S. N. Hart, J. Hartman, S. Hewitt, H. M. Horlings, Z. Husain, S. Irshad, E. A. Janssen, T. R. Kataoka, K. Kawaguchi, A. I. Khramtsov, U. Kiraz, P. Kirtani, L. L. Kodach, K. Korski, G. Akturk, E. Scott, A. Kovács, A. Lænkholm, C. Lang‐Schwarz, D. Larsimont, J. K. Lennerz, M. Lerousseau, X. Li, A. Madabhushi, S. K. Maley, V. Manur Narasimhamurthy, D. K. Marks, E. S. Mcdonald, R. Mehrotra, S. Michiels, D. Kharidehal, F. U. A. A. Minhas, S. Mittal, D. A. Moore, S. Mushtaq, H. Nighat, T. Papathomas, F. Penault‐Llorca, R. D. Perera, C. J. Pinard, J. C. Pinto‐Cardenas, G. Pruneri, L. Pusztai, N. M. Rajpoot, B. L. Rapoport, T. T. Rau, J. M. Ribeiro, D. Rimm, A. Vincent‐Salomon, J. Saltz, S. Sayed, E. Hytopoulos, S. Mahon, K. P. Siziopikou, C. Sotiriou, A. Stenzinger, M. A. Sughayer, D. Sur, F. Symmans, S. Tanaka, T. Taxter, S. Tejpar, J. Teuwen, E. A. Thompson, T. Tramm, W. T. Tran, J. Van Der Laak, G. E. Verghese, G. Viale, N. Wahab, T. Walter, Y. Waumans, H. Y. Wen, W. Yang, Y. Yuan, J. Bartlett, S. Loibl, C. Denkert, P. Savas, S. Loi, E. Specht Stovgaard, R. Salgado, W. M. Gallagher, A. Rahman, 2024
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Equivariant Multiscale Learned Invertible Reconstruction for Cone Beam CTN. Moriakov, J. Sonke, J. Teuwen, 2024
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Deep Cardiac MRI Reconstruction with ADMMStatistical Atlases and Computational Models of the Heart. Regular and CMRxRecon Challenge PapersG. Yiasemis, N. Moriakov, J. Sonke, J. Teuwen, 2024
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IMPORTANT-Net: Integrated MRI multi-parametric increment fusion generator with attention network for synthesizing absent dataInformation FusionT. Zhang, T. Tan, L. Han, X. Wang, Y. Gao, J. Van Dijk, A. Portaluri, A. Gonzalez-Huete, A. D’Angelo, C. Lu, J. Teuwen, R. Beets-Tan, Y. Sun, R. Mann, 2024, 108
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Nodule detection and generation on chest X-rays: NODE21 ChallengeIEEE Transactions on Medical ImagingE. Sogancioglu, B. Van Ginneken, F. Behrendt, M. Bengs, A. Schlaefer, M. Radu, D. Xu, K. Sheng, F. Scalzo, E. Marcus, S. Papa, J. Teuwen, E. T. Scholten, S. Schalekamp, N. Hendrix, C. Jacobs, W. Hendrix, C. I. Sánchez, K. Murphy, 2024
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Optimizing CycleGAN design for CBCT-to-CT translation: insights into 2D vs 3D modeling, patch size, and the need for tailored evaluation metricsMedical Imaging 2024: Image ProcessingI. Hadzic, S. Pai, V. Trier Taasti, D. Bontempi, I. Zhovannik, R. Canters, J. J. Sonke, A. Dekker, J. Teuwen, A. Traverso, 2024
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The state-of-the-art in Cardiac MRI Reconstruction: Results of the CMRxRecon Challenge in MICCAI 2023J. Lyu, C. Qin, S. Wang, F. Wang, Y. Li, Z. Wang, K. Guo, C. Ouyang, M. Tänzer, M. Liu, L. Sun, M. Sun, Q. Li, Z. Shi, S. Hua, H. Li, Z. Chen, Z. Zhang, B. Xin, D. N. Metaxas, G. Yiasemis, J. Teuwen, L. Zhang, W. Chen, Y. Pang, X. Liu, A. Razumov, D. V. Dylov, Q. Dou, K. Yan, Y. Xue, Y. Du, J. Dietlmeier, C. Garcia-Cabrera, Z. A. Hemidi, N. Vogt, Z. Xu, Y. Zhang, Y. Chu, W. Chen, W. Bai, X. Zhuang, J. Qin, L. Wu, G. Yang, X. Qu, H. Wang, C. Wang, 2024
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Application of deep learning on mammographies to discriminate between low and high-risk DCIS for patient participation in active surveillance trials.Cancer imaging: the official publication of the International Cancer Imaging SocietyS. Alaeikhanehshir, M. M. Voets, F. H. van Duijnhoven, E. H. Lips, E. J. Groen, M. C. J. van Oirsouw, S. E. Hwang, J. Y. Lo, J. Wesseling, R. M. Mann, J. Teuwen, 2024, 24;(1):48
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AI Applications to Breast MRI: Today and Tomorrow.Journal of magnetic resonance imaging: JMRIR. Lo Gullo, J. Brunekreef, E. Marcus, L. K. Han, S. Eskreis-Winkler, S. B. Thakur, R. Mann, K. Groot Lipman, J. Teuwen, K. Pinker, 2024
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Abstract 4951: Integrative multi-omic machine learning model predicts neoadjuvant immunotherapy response using molecular data and deep learning-derived features from digital pathologyCancer ResearchL. V. Leek, V. Botha, V. A. Baxi, J. Teuwen, H. M. Horlings, S. D. Chasalow, J. V. D. Haar, L. F. Wessels, A. Debroy, E. E. Voest, 2024, 84;(6_Supplement):4951-4951
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End-to-end Adaptive Dynamic Subsampling and Reconstruction for Cardiac MRIG. Yiasemis, J. Sonke, J. Teuwen, 2024
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Deep learning-based low-dose CT simulator for non-linear reconstruction methods.Medical physicsS. A. M. Tunissen, N. Moriakov, M. Mikerov, E. J. Smit, I. Sechopoulos, J. Teuwen, 2024
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Kandinsky conformal prediction: Efficient calibration of image segmentation algorithmsProceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)J. Brunekreef, E. Marcus, R. Sheombarsing, J. Sonke, J. Teuwen, 2024
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Improving lesion volume measurements on digital mammogramsMedical Image AnalysisN. Moriakov, J. Peters, R. Mann, N. Karssemeijer, J. Van Dijck, M. Broeders, J. Teuwen, 2024
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AI-enhanced Mammography With Digital Breast Tomosynthesis for Breast Cancer Detection: Clinical Value and Comparison With Human PerformanceRadiology: Imaging CancerD. Resch, R. Lo Gullo, J. Teuwen, F. Semturs, J. Hummel, A. Resch, K. Pinker, 2024, 6;(4)
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Nodule Detection and Generation on Chest X-Rays: NODE21 Challenge.IEEE transactions on medical imagingE. Sogancioglu, B. v. Ginneken, F. Behrendt, M. Bengs, A. Schlaefer, M. Radu, D. Xu, K. Sheng, F. Scalzo, E. Marcus, S. Papa, J. Teuwen, E. T. Scholten, S. Schalekamp, N. Hendrix, C. Jacobs, W. Hendrix, C. I. Sanchez, K. Murphy, 2024, 43;(8):2839-2853
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Ordinal Learning: Longitudinal Attention Alignment Model for Predicting Time to Future Breast Cancer Events from MammogramsLecture Notes in Computer ScienceX. Wang, T. Tan, Y. Gao, E. Marcus, L. Han, A. Portaluri, T. Zhang, C. Lu, X. Liang, R. Beets-Tan, J. Teuwen, R. Mann, 2024
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Improving Neoadjuvant Therapy Response Prediction by Integrating Longitudinal Mammogram Generation with Cross-Modal Radiological Reports: A Vision-Language Alignment-Guided ModelLecture Notes in Computer ScienceY. Gao, H. Zhou, X. Wang, T. Zhang, L. Han, C. Lu, X. Liang, J. Teuwen, R. Beets-Tan, T. Tan, R. Mann, 2024
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Improving Rectal Tumor Segmentation with Anomaly Fusion Derived from Anatomical Inpainting: A Multicenter StudyL. Cai, M. A. Abdelatty, L. Han, D. Lambregts, J. Van Griethuysen, E. Pooch, R. G. Beets-Tan, S. Benson, J. Brunekreef, J. Teuwen, 2024
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Deep learning‐based low‐dose CT simulator for non‐linear reconstruction methodsMedical PhysicsS. A. M. Tunissen, N. Moriakov, M. Mikerov, E. J. Smit, I. Sechopoulos, J. Teuwen, 2024, 51;(9):6046-6060
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Deep Multi-contrast Cardiac MRI Reconstruction via vSHARP with Auxiliary Refinement NetworkG. Yiasemis, N. Moriakov, J. Sonke, J. Teuwen, 2024
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2023
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STAPLER: Efficient learning of TCR-peptide specificity prediction from full-length TCR-peptide dataB. P. Y. Kwee, M. Messemaker, E. Marcus, G. Oliveira, W. Scheper, C. J. Wu, J. Teuwen, T. N. Schumacher, 2023
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RadioLOGIC, a healthcare model for processing electronic health records and decision-making in breast diseaseCell Reports MedicineT. Zhang, T. Tan, X. Wang, Y. Gao, L. Han, L. Balkenende, A. D’Angelo, L. Bao, H. M. Horlings, J. Teuwen, R. G. Beets-Tan, R. M. Mann, 2023
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Spatial analyses of immune cell infiltration in cancer: current methods and future directions. A report of the International Immuno‐Oncology Biomarker Working Group on Breast CancerThe Journal of PathologyD. B. Page, G. Broeckx, C. A. Jahangir, S. Verbandt, R. R. Gupta, J. Thagaard, R. Khiroya, Z. Kos, K. Abduljabbar, G. Acosta Haab, B. Acs, J. S. Almeida, I. Alvarado‐Cabrero, F. Azmoudeh‐Ardalan, S. Badve, N. B. Baharun, E. R. Bellolio, V. Bheemaraju, K. R. Blenman, L. Botinelly Mendonça Fujimoto, O. Burgues, M. C. U. Cheang, F. Ciompi, L. A. Cooper, A. Coosemans, G. Corredor, F. L. Dantas Portela, F. Deman, S. Demaria, S. N. Dudgeon, M. Elghazawy, S. Ely, C. Fernandez‐Martín, S. Fineberg, S. B. Fox, W. M. Gallagher, J. M. Giltnane, S. Gnjatic, P. I. Gonzalez‐Ericsson, A. Grigoriadis, N. Halama, M. G. Hanna, A. Harbhajanka, A. Hardas, S. N. Hart, J. Hartman, S. Hewitt, A. I. Hida, H. M. Horlings, Z. Husain, E. Hytopoulos, S. Irshad, E. A. Janssen, M. Kahila, T. R. Kataoka, K. Kawaguchi, D. Kharidehal, A. I. Khramtsov, U. Kiraz, P. Kirtani, L. L. Kodach, K. Korski, A. Kovács, A. Laenkholm, C. Lang‐Schwarz, D. Larsimont, J. K. Lennerz, M. Lerousseau, X. Li, A. Ly, A. Madabhushi, S. K. Maley, V. Manur Narasimhamurthy, D. K. Marks, E. S. Mcdonald, R. Mehrotra, S. Michiels, F. U. A. A. Minhas, S. Mittal, D. A. Moore, S. Mushtaq, H. Nighat, T. Papathomas, F. Penault‐Llorca, R. D. Perera, C. J. Pinard, J. C. Pinto‐Cardenas, G. Pruneri, L. Pusztai, A. Rahman, N. M. Rajpoot, B. L. Rapoport, T. T. Rau, J. S. Reis‐Filho, J. M. Ribeiro, D. Rimm, A. Salomon, M. Salto‐Tellez, J. Saltz, S. Sayed, K. P. Siziopikou, C. Sotiriou, A. Stenzinger, M. A. Sughayer, D. Sur, F. Symmans, S. Tanaka, T. Taxter, S. Tejpar, J. Teuwen, E. A. Thompson, T. Tramm, W. T. Tran, J. Van Der Laak, P. J. Van Diest, G. E. Verghese, G. Viale, M. Vieth, N. Wahab, T. Walter, Y. Waumans, H. Y. Wen, W. Yang, Y. Yuan, S. Adams, J. M. S. Bartlett, S. Loibl, C. Denkert, P. Savas, S. Loi, R. Salgado, E. Specht Stovgaard, G. Akturk, N. Bouchmaa, 2023
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Pitfalls in machine learning‐based assessment of tumor‐infiltrating lymphocytes in breast cancer: A report of the International Immuno‐Oncology Biomarker Working Group on Breast CancerThe Journal of PathologyJ. Thagaard, G. Broeckx, D. B. Page, C. A. Jahangir, S. Verbandt, Z. Kos, R. Gupta, R. Khiroya, K. Abduljabbar, G. Acosta Haab, B. Acs, G. Akturk, J. S. Almeida, I. Alvarado‐Cabrero, M. Amgad, F. Azmoudeh‐Ardalan, S. Badve, N. B. Baharun, E. Balslev, E. R. Bellolio, V. Bheemaraju, K. R. Blenman, L. Botinelly Mendonça Fujimoto, N. Bouchmaa, O. Burgues, A. Chardas, M. Chon U Cheang, F. Ciompi, L. A. Cooper, A. Coosemans, G. Corredor, A. B. Dahl, F. L. Dantas Portela, F. Deman, S. Demaria, J. Doré Hansen, S. N. Dudgeon, T. Ebstrup, M. Elghazawy, C. Fernandez‐Martín, S. B. Fox, W. M. Gallagher, J. M. Giltnane, S. Gnjatic, P. I. Gonzalez‐Ericsson, A. Grigoriadis, N. Halama, M. G. Hanna, A. Harbhajanka, S. N. Hart, J. Hartman, S. Hauberg, S. Hewitt, A. I. Hida, H. M. Horlings, Z. Husain, E. Hytopoulos, S. Irshad, E. A. Janssen, M. Kahila, T. R. Kataoka, K. Kawaguchi, D. Kharidehal, A. I. Khramtsov, U. Kiraz, P. Kirtani, L. L. Kodach, K. Korski, A. Kovács, A. Laenkholm, C. Lang‐Schwarz, D. Larsimont, J. K. Lennerz, M. Lerousseau, X. Li, A. Ly, A. Madabhushi, S. K. Maley, V. Manur Narasimhamurthy, D. K. Marks, E. S. Mcdonald, R. Mehrotra, S. Michiels, F. U. A. A. Minhas, S. Mittal, D. A. Moore, S. Mushtaq, H. Nighat, T. Papathomas, F. Penault‐Llorca, R. D. Perera, C. J. Pinard, J. C. Pinto‐Cardenas, G. Pruneri, L. Pusztai, A. Rahman, N. M. Rajpoot, B. L. Rapoport, T. T. Rau, J. S. Reis‐Filho, J. M. Ribeiro, D. Rimm, A. Roslind, A. Vincent‐Salomon, M. Salto‐Tellez, J. Saltz, S. Sayed, E. Scott, K. P. Siziopikou, C. Sotiriou, A. Stenzinger, M. A. Sughayer, D. Sur, S. Fineberg, F. Symmans, S. Tanaka, T. Taxter, S. Tejpar, J. Teuwen, E. A. Thompson, T. Tramm, W. T. Tran, J. Van Der Laak, P. J. Van Diest, G. E. Verghese, G. Viale, M. Vieth, N. Wahab, T. Walter, Y. Waumans, H. Y. Wen, W. Yang, Y. Yuan, R. M. Zin, S. Adams, J. Bartlett, S. Loibl, C. Denkert, P. Savas, S. Loi, R. Salgado, E. Specht Stovgaard, 2023, 260;(5):498-513
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Development, validation, and simplification of a scanner‐specific CT simulatorMedical PhysicsS. A. M. Tunissen, L. J. Oostveen, N. Moriakov, J. Teuwen, K. Michielsen, E. J. Smit, I. Sechopoulos, 2023
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vSHARP: variable Splitting Half-quadratic ADMM algorithm for Reconstruction of inverse-ProblemsG. Yiasemis, N. Moriakov, J. Sonke, J. Teuwen, 2023
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Synthesis of Contrast-Enhanced Breast MRI Using T1- and Multi-b-Value DWI-Based Hierarchical Fusion Network with Attention MechanismLecture Notes in Computer ScienceT. Zhang, L. Han, A. D’Angelo, X. Wang, Y. Gao, C. Lu, J. Teuwen, R. Beets-Tan, T. Tan, R. Mann, 2023
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Beyond the AJR: A Breakthrough in the Use of Artificial Intelligence for Mammography in Screening for Breast CancerAmerican Journal of RoentgenologyR. M. Mann, J. Teuwen, 2023
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End‐to‐end memory‐efficient reconstruction for cone beam CTMedical PhysicsN. Moriakov, J. Sonke, J. Teuwen, 2023, 12;(50):7579-7593
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JSSL: Joint Supervised and Self-supervised Learning for MRI ReconstructionG. Yiasemis, N. Moriakov, C. I. Sánchez, J. Sonke, J. Teuwen, 2023
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Clinicopathological and prognostic value of calcification morphology descriptors in ductal carcinoma in situ of the breast: a systematic review and meta-analysisInsights into ImagingM. M. Van Leeuwen, S. Doyle, A. W. Van Den Belt–Dusebout, S. Van Der Mierden, C. E. Loo, R. M. Mann, J. Teuwen, J. Wesseling, 2023, 14;(1)
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Deep learning-based breast region segmentation in raw and processed digital mammograms: generalization across views and vendorsJournal of Medical ImagingS. D. Verboom, M. Caballo, J. Peters, J. Gommers, D. Van Den Oever, M. J. M. Broeders, J. Teuwen, I. Sechopoulos, 2023, 11;(01)
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2022
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Evaluation of deep learning-based multiparametric MRI oropharyngeal primary tumor auto-segmentation and investigation of input channel effects: Results from a prospective imaging registryClinical and Translational Radiation OncologyK. A. Wahid, S. Ahmed, R. He, L. V. Van Dijk, J. Teuwen, B. A. Mcdonald, V. Salama, A. S. Mohamed, T. Salzillo, C. Dede, N. Taku, S. Y. Lai, C. D. Fuller, M. A. Naser, 2022, 32
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DeepSMILE: Contrastive self-supervised pre-training benefits MSI and HRD classification directly from H&E whole-slide images in colorectal and breast cancerMedical Image AnalysisY. Schirris, E. Gavves, I. Nederlof, H. M. Horlings, J. Teuwen, 2022, 79
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Application of Deep Learning in Breast Cancer ImagingSeminars in Nuclear MedicineL. Balkenende, J. Teuwen, R. M. Mann, 2022, 52;(5):584-596
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Multi-Coil MRI Reconstruction Challenge—Assessing Brain MRI Reconstruction Models and Their Generalizability to Varying Coil ConfigurationsFrontiers in NeuroscienceY. Beauferris, J. Teuwen, D. Karkalousos, N. Moriakov, M. Caan, G. Yiasemis, L. Rodrigues, A. Lopes, H. Pedrini, L. Rittner, M. Dannecker, V. Studenyak, F. Gröger, D. Vyas, S. Faghih-Roohi, A. Kumar Jethi, J. Chandra Raju, M. Sivaprakasam, M. Lasby, N. Nogovitsyn, W. Loos, R. Frayne, R. Souza, 2022, 16
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DIRECT: Deep Image REConstruction ToolkitJournal of Open Source SoftwareG. Yiasemis, N. Moriakov, D. Karkalousos, M. Caan, J. Teuwen, 2022, 7;(73):4278
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